2024 Qtl cartographer 2.5

Qtl cartographer 2.5

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WebSep 29, 2001 · QTL Cartographer2.5 software program was used to analyze marker-QTL associations using test statistics composite interval mapping calibrated at one thousand test permutations to calculate the... WebStep 3—Analyzing data using QTL Mapping Methods With WinQTLCart able to view the data, you can then select any of six different analysis methods. The end result for some of these methods is another MCD file, but in most cases the process will create a .QRT result file that WinQTLCart can use to graph QTL information.

Composite Interval Mapping and Multiple Interval Mapping

WebQTL Cartographer is a suite of programs to map quantitative traits using a map of molecular markers. Windows QTL Cartographer maps quantitative trait loci in cross populations … WebQuantitative trait locus (QTL) analysis was performed to identify the loci controlling these floral traits, using backcross recombinant inbred lines derived from a cross between … serious mass vs pro gainer

Windows QTL Cartographer 2.5 - North Carolina State University

WebWindows QTL Cartographer V2.5_011 Release Date: 01 - AUG - 2012 Shengchu Wang, Christopher J. Basten and Zhao-Bang Zeng Program in Statistical Genetics, North Carolina … WebJan 1, 1996 · QTL mapping was conducted by QTL Cartographer 2.5 (Basten et al. 1997) with the composite interval mapping method (Zeng 1994). The permutation test was run … WebNov 11, 2014 · The Windows version of QTL Cartographer V2.5 [ 36] was used to conduct composite interval mapping (CIM) analysis based on model 6. The forward and backward regression method was used as a cofactor to control the genetic background while testing a position in the genome. The walking speed chosen for the QTL analysis was 2.0°CM. serious medical incident involving child

QTL Cartographer :: Genetic Analysis Software - GitHub Pages

WebDec 9, 2016 · Although below the threshold (2.5), the LOD score of qWCR1 was 2.18 in 2012. qWCR2 was only identified in 2012; nevertheless, it shared the same interval with the major QTL qWBR2. The remaining QTLs, qWCR3 and qWCR6, were only detected in 2011 and explained 6.4 and 8.2% of the phenotypic variation, respectively. WebDec 10, 2024 · To detect the QTL controlling seed set and number of sterile spikelets per spike in BC 1 populations, composite interval mapping with a 5-cM window and a maximum of 10 marker cofactors per model was carried out using the Windows QTL Cartographer version 2.5 (Wang et al., 2012). Tests were performed at 1-cM intervals, and cofactors … serious media sdn bhdWebSuppose, I got QTL positioned on 9.8 cM, and the left and right flanking marker positions are 2.5 cM and 14.6 cM. In between 2.5 cM and 14.6 cM, many markers are present. In this case, shall... serious mass protein powder 12 lbs

"WebApr 12, 2024 · We used QTL Cartographer (version 1.17j) software (NCSU, Raleigh, NC, USA) for QTL analysis. The Composite Interval Mapping (CIM) method with 95% confidence intervals and 1.0 cM walking speed precision was chosen for QTL mapping. Putative QTL were declared after 1000 permutation trials using a log-likelihood (LOD) threshold of 2.5. " - Qtl cartographer 2.5

Qtl cartographer 2.5

Identification of QTLs and joint QTL segments of leaflet traits at ...

Web4Windows QTL Cartographer 2.5 © 2010 N.C. State University, Bioinformatics Research Center When to use WinQTLCart You can use WinQTLCart for any kind of data that is … WebJun 1, 2024 · QTL were detected with Windows QTL Cartographer 2.5 software [30], at a threshold LOD score set to 2.5 using 1000 permutation tests. ... QTL thus identified were designated identified QTL. The identified QTL 18WH-OC-1 represents seeds sown in Wuhan in 2024, OC stands for oil content, and 1 represents the serial number of the QTL in the …

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Webqtl×环境互作分析表明, 仅qph1-1、qflw2、qepp1和qtgw5-1 4个qtl存在显著的加性×环境互作效应。进一步对qtgw5-1定位区间所包含的gw5测序分析表明, 高产株系和低产株系的gw5等位基因分别来自亲本中嘉早17和d50, 这与检测到的qtgw5-1的加性效应来自亲本中嘉早17相符。 ... WebDec 1, 2024 · The contribution rate (R 2) and additive effect of a presumptive QTL were simultaneously calculated using Windows QTL Cartographer 2.5. The QTL nomenclature described by McCouch et al. (1997) was adopted in this study, each designation was named begins with ‘q’ followed by the abbreviation of the trait name, the linkage group, and the ...

Web1.3 QTL 定位方法 QTL 定位分析使用 WinQTL Cartographer V. 2.5[13] 复合区间作图(CIM)和多标记联合分析。 CIM 法使用标准模型 6, 步长为 1 cM, 采用向前回归法搜寻 QTL 和公共因子, 窗口大小设为 10 cM, 最多 5 个高 P 值的背景标记作为协变量控制其遗传背景。 WebMay 26, 2024 · With the ultra-high-density linkage maps, a total of four QTLs were identified after 1000 permutations with an empirical logarithm of the odds (LOD) threshold of 3.5, 4.0 and 3.5 for HL, HN and HW, respectively (Table 2 and Fig. 2 ). The average of QTL intervals was 6.0 Mb with a range of 5.1–8.9 Mb.

WebDec 1, 2024 · Windows QTL cartographer 2.5 (Wang et al. 2012) was used to perform QTL analysis. Composite interval mapping (CIM) analysis was performed using Kosambi map function with Ri1 cross type (recombinant inbred line, derived by selfing), and forward and backward regression method was used with F-in and F-out equal to 0.01 selection criteria. ... WebThe results of several QTL mapping studies have indicated that there are only few major genes, which interact with numerous minor genes and environment to give continuous trait phenotype characteristic of quantitative traits. Thus …

WebJan 25, 2016 · The software Windows QTL Cartographer 2.5 was used to conduct the composite interval mapping (CIM) . The LOD value chosen was 3.4 to declare a QTL significant based on a permutation test with 1,000 runs to determine the P = 0.05 genome-wide significance level. To identify more potential QTLs, a QTL with a LOD value more …

WebMar 28, 2012 · Windows QTL Cartographer Version 2.5 (WinQTLcart2.5) software was used in QTL mapping via the composite interval mapping method [69]. The logarithm of the … serious mass weight gainWeb2007 N.C. State University, Bioinformatics Research Center I Windows QTL Cartographer 2.5 Table of Contents About Windows QTL Cartographer 4 WinQTLCart... QTL-cartographer. Mapping Quantitative Trait Loci with QTL Cartographer There are two stages to...les in a working directory under QTLCartWin. When you ran Rmap you set ... WinQTLCart. 2005 N ... serious men nawazuddinWebApr 11, 2016 · Windows QTL Cartographer 2.5 was used to identify QTLs by composite interval mapping method on the environment by environment basis of the 11 environments. The LOD threshold for declaring significant QTLs included the QTLs across environments calculated by a permutation test with the mapping step of 1.0 cM, five control markers, … serious mental illness costs how much a yearWebQuantitative trait locus (QTL) analysis was performed to identify the loci controlling these floral traits, using backcross recombinant inbred lines derived from a cross between Nipponbare and W630. A total of 11 significant QTLs were identified. serious mental illness age 12WebMar 28, 2012 · QTLs were detected by composite interval mapping (CIM) using WinQTL cartographer 2.5 software (http://statgen.ncsu.edu/qtlcar/WQTLCart.htm) (Wang et al., 2006). For each trait, QTL threshold... serious mental illness health checkshttp://gaow.github.io/genetic-analysis-software/q/qtl-cartographer/ serious mental illness qofWebWinQTLCart Windows QTL Cartographer V2.5 WinQTLCart Cartographer QTL Cartographer is WinQTLCart's command-line sibling. QTLCart is a suite of command-line programs to map quantitative traits using a map of molecular The programs … serious mental illness criteria